PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00097086001
Common NameGSBRNA2T00097086001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 245aa    MW: 26184.2 Da    PI: 8.2256
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00097086001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.32.5e-38151151100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                          +C aCk+lrrkCa+dC++apyf +eq +++fa++hklFGasnv+kll ++p ++r +a+ +++yeA+ar++dPvyG+v++i++lqqq+++
  GSBRNA2T00097086001  15 PCGACKFLRRKCASDCIFAPYFSSEQgAARFAAIHKLFGASNVSKLLLNVPIHDRCEAVVTIAYEAQARLHDPVYGCVSHIFALQQQVAC 104
                          7***********************9989************************************************************** PP

               DUF260  90 lkaelallkee 100
                          l+a++ ++k++
  GSBRNA2T00097086001 105 LQAQVMQMKAQ 115
                          ****9999887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.68714116IPR004883Lateral organ boundaries, LOB
PfamPF031952.3E-3715113IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MATSGNGTTA GTGSPCGACK FLRRKCASDC IFAPYFSSEQ GAARFAAIHK LFGASNVSKL  60
LLNVPIHDRC EAVVTIAYEA QARLHDPVYG CVSHIFALQQ QVACLQAQVM QMKAQIAGHQ  120
TSAAGDLRNS SESTHEYTTW QQSSGSPIGS AYAAPYAHHH PYYGHVNPNN QVSPQSSLEE  180
SLSSTSSNVT TTANVRETHQ TGGGVYRHGG LGFHEGYPNK KRSVSYCNSD LGELQALALR  240
MMKN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738510.0AB473851.1 Arabidopsis thaliana ASL18 mRNA for ASYMMETRIC LEAVES2-like 18 protein, complete cds.
GenBankAF3453390.0AF345339.1 Arabidopsis thaliana MHK10.15/At2g42430 mRNA, complete cds.
GenBankAF4103340.0AF410334.1 Arabidopsis thaliana At2g42430/MHK10.15 mRNA, complete cds.
GenBankAF4478900.0AF447890.1 Arabidopsis thaliana LOB DOMAIN 16 (LBD16) mRNA, complete cds.
GenBankBT0008660.0BT000866.1 Arabidopsis thaliana At2g42430/MHK10.15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010506068.11e-165PREDICTED: LOB domain-containing protein 16 isoform X1
RefseqXP_010506069.11e-165PREDICTED: LOB domain-containing protein 16 isoform X2
SwissprotQ9SLB71e-166LBD16_ARATH; LOB domain-containing protein 16
TrEMBLA0A078JRJ30.0A0A078JRJ3_BRANA; BnaAnng32930D protein
STRINGBra004693.1-P1e-164(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.11e-117lateral organ boundaries-domain 16
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]